1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactacccttttctcatggtgaatttaactgtgtattaactctttggagcatgttctcttgtacttcaaccagtcctggcatgccctaaaaaatagtaattataattaaattatgctaaacttatctattagttggaagatttcttgatattttttcttaatattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTCTTGAGATGCATGGCGAGGTCACTGAATTTGGAAGAGGGTAGCTTCGTG
species | Glycine max |
transcript | GLYMA17G11690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|51342111|gb|CO983374.1|CO983374
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|151400373|gb|EV270187.1|EV270187
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAGATCAATGATGGAATATCTEST: gi|192295902|gb|FG990912.1|FG990912
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCCEST: gi|192326330|gb|FK015877.1|FK015877
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|209719908|gb|BW665991.1|BW665991
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|209717443|gb|BW659092.1|BW659092
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|213610641|gb|DB961116.1|DB961116
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|19348045|gb|BM892577.1|BM892577
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTEST: gi|33388362|gb|CA851569.1|CA851569
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: CTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG TGAGAAATTAGAGGAGTNNNCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: CTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
taaacttatctattagttggaagatttcttgatattttttcttaatattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTCTTGAGATGCATGGCGAGGTCACTGAATTTGGAAGAGGGTAGCTTCGTG
aagatttcttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacccttttctcatggtgaatttaactgtgtattaactctttggagcatgttctcttgtacttcaaccagtcctggcatgccctaaaaaatagtaattataattaaattatgctaaacttatctattagttggaagatttcttgatattttttcttaatattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTCTTGAGATGCATGGCGAGGTCACTGAATTTGGAAGAGGGTAGCTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG