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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacccttttctcatggtgaatttaactgtgtattaactctttggagcatgttctcttgtacttcaaccagtcctggcatgccctaaaaaatagtaattataattaaattatgctaaacttatctattagttggaagatttcttgatattttttcttaatattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTCTTGAGATGCATGGCGAGGTCACTGAATTTGGAAGAGGGTAGCTTCGTG

Basic information

species Glycine max
transcript GLYMA17G11690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326960|gb|FK015172.1|FK015172
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|51342111|gb|CO983374.1|CO983374
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|151400373|gb|EV270187.1|EV270187
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAGATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|192295902|gb|FG990912.1|FG990912
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCC
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|192326330|gb|FK015877.1|FK015877
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|209719908|gb|BW665991.1|BW665991
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|209717443|gb|BW659092.1|BW659092
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|213610641|gb|DB961116.1|DB961116
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|19348045|gb|BM892577.1|BM892577
EST:     GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: GAAACAAAACGAAGGCTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT
EST: gi|33388362|gb|CA851569.1|CA851569
EST:     CTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAG                         TGAGAAATTAGAGGAGTNNNCTACGAAAGTGAAATCAATGATGGAATATCT
genomic: CTTTCTCTTTGGCCAAAAATTCCTACTGATTTTAGgtactaccct ... tattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacttatctattagttggaagatttcttgatattttttcttaatattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTCTTGAGATGCATGGCGAGGTCACTGAATTTGGAAGAGGGTAGCTTCGTG
                    aagatttcttgatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactacccttttctcatggtgaatttaactgtgtattaactctttggagcatgttctcttgtacttcaaccagtcctggcatgccctaaaaaatagtaattataattaaattatgctaaacttatctattagttggaagatttcttgatattttttcttaatattatgcagTGAGAAATTAGAGGAGTTTTCTACGAAAGTGAAATCAATGATGGAATATCTCTTGAGATGCATGGCGAGGTCACTGAATTTGGAAGAGGGTAGCTTCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG