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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatactatttgtgtttatgaaattaaactgattgtgcagttgttttaatggaatattctctgaggtttgacacataatatcttatggtttgagtgtacttgcatgttttgttacgttctaaatttgaagaaagctaacttttttctgttttctttcccagGATCTTTATGTTTTACGGTTTTTCAATCGATTAGATGAGACCAAAAAGGGAGAG

Basic information

species Glycine max
transcript GLYMA17G11250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213615305|gb|DB963499.1|DB963499
EST:     GACCCACGCTAATGGTGGAGGAGCTAGGTCGTCGAAAGGTCAACAATGGG                         GATCTTTATGTTTTACGGTTTTTCAATCGATTAGATGAGACCAAAAAGGGA
genomic: GACCCACGCTAATGGTGGAGGAGCTAGGTCGTCGAAAGGTCAACAATGGGgtaaaatact ... tctttcccagGATCTTTATGTTTTACGGTTTTTCAATCGATTAGATGAGACCAAAAAGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttacgttctaaatttgaagaaagctaacttttttctgttttctttcccagGATCTTTATGTTTTACGGTTTTTCAATCGATTAGATGAGACCAAAAAGGGAGAG
                          agctaac  putative branch site (score: 2)
                            ctaacttttttctgtt  CT-rich tract
             taaatttgaagaaa  TA-rich tract