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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaatttgtggtttatatttgggtgatatatataaaagcttgtgatttgtagttatgcttgacaatgtgcgggcttgaaatgtgccagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGAAATCAACACTTAGGTCCATTGATATTATTGGTCTTGGGATGGGACCTGA

Basic information

species Glycine max
transcript GLYMA17G08150.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208330389|gb|GE130248.1|GE130248
EST:     AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA
genomic: AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtgccagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA
EST: gi|7684931|gb|AW755579.1|AW755579
EST:     AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCTAAGA
genomic: AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtgccagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA
EST: gi|208268739|gb|GE071652.1|GE071652
EST:     AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA
genomic: AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtgccagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA
EST: gi|151410948|gb|EV280763.1|EV280763
EST:     AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA
genomic: AGGACTCTCTGCTCAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtgccagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagcttgtgatttgtagttatgcttgacaatgtgcgggcttgaaatgtgccagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAGTCAGAAGCAAAGAAATCAACACTTAGGTCCATTGATATTATTGGTCTTGGGATGGGACCTGA
                       gcttgac  putative branch site (score: 4)
           atttgta  TA-rich tract