1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtactgtgttcctctctattttttttttttttggctaagctctctttctattattattattattattattattattattattattattattattattattattattatttgggactacatatcatcatatgtaaatacaagttattttgtttgatggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATTCAGATGAATGGAAAGGGGAGTTTTTCCCTGACATTCCCAAAATTAAAT
species | Glycine max |
transcript | GLYMA17G07380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG ATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATEST: gi|24136612|gb|BU927122.1|BU927122
genomic: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTGgtactgtgtt ... ggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGAT
EST: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG ATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATEST: gi|192294738|gb|FG986587.1|FG986587
genomic: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTGgtactgtgtt ... ggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGAT
EST: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG ATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATEST: gi|213600839|gb|DB956231.1|DB956231
genomic: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTGgtactgtgtt ... ggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGAT
EST: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG ATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATEST: gi|208208192|gb|GE003423.1|GE003423
genomic: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTGgtactgtgtt ... ggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGAT
EST: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG ATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGAT
genomic: TGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTGgtactgtgtt ... ggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGAT
gggactacatatcatcatatgtaaatacaagttattttgtttgatggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATTCAGATGAATGGAAAGGGGAGTTTTTCCCTGACATTCCCAAAATTAAAT
gtttgat putative branch site (score: 5)
atatgtaaatacaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtgttcctctctattttttttttttttggctaagctctctttctattattattattattattattattattattattattattattattattattattattatttgggactacatatcatcatatgtaaatacaagttattttgtttgatggcaaaacagATTGGTGCTCCTCAAACTTGTCCTGCTAACAATGAGGATAAATGCGGCGATTCAGATGAATGGAAAGGGGAGTTTTTCCCTGACATTCCCAAAATTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG