Sequence
atgc intronic sequence ATGC exonic sequence...gttatatatatatatgtgtgtgtgtttctataacaagctagttaattcaaagagtatgtcaaatgcttaagtggtacttagttaagacatgtttggttagGTTACCTAAATGATCAAGAGGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACAGGTGATATTGGATACATAGATGATAATGATGAGCTCTT
Basic information
species | Glycine max |
transcript | GLYMA17G07170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07170.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0052g01110.t01 (Vitis vinifera), 3'ss of exon 2
gttatatatatatatgtgtgtgtgtttctataacaagctagttaattcaaagagtatgtcaaatgcttaa--gtggtacttagtt-aagac--atgtttggttagGTTACCTAAATGATCAAGAGGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACAGGTGATATTGGATACATAGATGATAATGATGAGCTCTT
|| | | | ||| | | | | | || | | |||| || || | | |||| ||| || | || | ||| || || | |||||| || |||||| |||||||| || | | |||||| ||| | |||| | |||||||||||||| |||||||||||||||||||||||||||||
----catgggtct-taattgtctatcacgtgggccacttatatcttacaaaatttaaatctagtacttatttgtgaggctaaatttaggaccaattgtttatcagGTTATCTTAATGATATTGAGGCCACTAAAGAAGCCATAGACGAAGAAAAATGGCTACACACAGGTGATATCGGATACATAGATGATAATGATGAGCTCTT
upper sequence: GLYMA17G07170.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0052g01090.t01 (Vitis vinifera), 3'ss of exon 2
gttatatatatatatgtgtgtgtgtttctataacaagctagttaattcaaagagt---atgtcaaatgcttaagtggtacttagttaagacatgtttggttagGTTACCTAAATGATCAAGAGGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACAGGTGATATTGGATACATAGATGATAATGATGAGCTCTT
|| | | | | | || || | | | || || | | | | |||| | | | ||| | | ||| |||||||| || ||||||| |||||||||||||||||| ||||| |||| ||||||| ||||||||||||| || ||||| || |||||| |||||||||| ||
---ttaattttcctttttctcatattattaagttcggttgaaaattttaataaattaagctttttttaattaatttttttattgtttattgtttattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATGGCTGCACACAGGTGACATCGGATATATTGATGATGATGATGAGCTTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaaagagtatgtcaaatgcttaagtggtacttagttaagacatgtttggttagGTTACCTAAATGATCAAGAGGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACAGGTGATATTGGATACATAGATGATAATGATGAGCTCTT
ttagttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatatatatatatgtgtgtgtgtttctataacaagctagttaattcaaagagtatgtcaaatgcttaagtggtacttagttaagacatgtttggttagGTTACCTAAATGATCAAGAGGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACAGGTGATATTGGATACATAGATGATAATGATGAGCTCTT
- - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - -caagcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgc