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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagtatgatgctttgctatggatcaattgttctactgttattccactcttacactttcatttcgctgttattttgttttatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG

Basic information

species Glycine max
transcript GLYMA17G07060.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412919|gb|EV282731.1|EV282731
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|213605874|gb|DB968626.1|DB968626
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|151395000|gb|EV264871.1|EV264871
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31464914|gb|CD406942.1|CD406942
EST:     ACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: ACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|209725386|gb|BW651543.1|BW651543
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|26059688|gb|CA802602.1|CA802602
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|9899832|gb|BE608800.1|BE608800
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|18040343|gb|BM308637.1|BM308637
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|193307254|gb|FK271094.1|FK271094
EST:     G-CTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|21602785|gb|BQ613116.1|BQ613116
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31308984|gb|CD394187.1|CD394187
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|213593117|gb|DB983405.1|DB983405
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|209724399|gb|BW658168.1|BW658168
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|9819380|gb|BE554893.1|BE554893
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|19269894|gb|BM886150.1|BM886150
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31560910|gb|CD486748.1|CD486748
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTNTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACT-TGCAG
EST: gi|5509823|gb|AI856381.1|AI856381
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31462481|gb|CD404509.1|CD404509
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|15287753|gb|BI471644.1|BI471644
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31466411|gb|CD408439.1|CD408439
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAATTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAT
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|214007236|gb|DB985828.1|DB985828
EST:     GAT--TACTGTTTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: -CTGGGA-AGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|192327917|gb|FK022462.1|FK022462
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTGTATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|21256683|gb|BQ453571.1|BQ453571
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|15204194|gb|BI426962.1|BI426962
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31308447|gb|CD393650.1|CD393650
EST:     GACTGGGAAGCCTGTAATTGTGGAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|193595647|gb|FK552286.1|FK552286
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|14195915|gb|BE819926.2|BE819926
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|18039184|gb|BM307478.1|BM307478
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31305712|gb|CD390915.1|CD390915
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31463662|gb|CD405690.1|CD405690
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|214009878|gb|DB987526.1|DB987526
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|19053095|gb|BM731762.1|BM731762
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31305547|gb|CD390750.1|CD390750
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|254343494|gb|GR857250.1|GR857250
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|6071473|gb|AW100860.1|AW100860
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|209724400|gb|BW658169.1|BW658169
EST:     GAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31456379|gb|CD398407.1|CD398407
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|213603532|gb|DB970517.1|DB970517
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31457843|gb|CD399871.1|CD399871
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31561042|gb|CD486880.1|CD486880
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|8826564|gb|BE210294.1|BE210294
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
EST: gi|31459011|gb|CD401039.1|CD401039
EST:     GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG                         GCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
genomic: GACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtat ... tatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttattccactcttacactttcatttcgctgttattttgttttatttttcagGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAG
            ctcttac  putative branch site (score: 3)
                                     ttttgttttatttttc  putative PPT
                                tgttattttgttttat  TA-rich tract