1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtactgttattactgtaactgtacttccgtttccgtttttttttttgtctgttaattattacgccgattttatgcttattcttcgggattttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAGACTCACGTTCTTTTCTTTTTAGCTAC
species | Glycine max |
transcript | GLYMA17G07050.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATG GATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAGEST: gi|254346950|gb|GR856672.1|GR856672
genomic: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATGgtactgttat ... ttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAG
EST: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATG GATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAGEST: gi|192316746|gb|FK006449.1|FK006449
genomic: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATGgtactgttat ... ttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAG
EST: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATG GATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAGEST: gi|213615154|gb|DB963366.1|DB963366
genomic: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATGgtactgttat ... ttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAG
EST: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATG GATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAG
genomic: AAGAGGCCAAAGCGCGATACGAGAAGGCCACGTTCAGAGTCGTCGATATGgtactgttat ... ttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAG
tgtctgttaattattacgccgattttatgcttattcttcgggattttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAGACTCACGTTCTTTTCTTTTTAGCTAC
tgttaat putative branch site (score: 3)
ttttcc putative PPT
attttatgcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttattactgtaactgtacttccgtttccgtttttttttttgtctgttaattattacgccgattttatgcttattcttcgggattttccgagcagGATGATTATGCCGCCGATGACGATGAATACGAGGAAAGGTTCAAAAAAGAGACTCACGTTCTTTTCTTTTTAGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA