Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttatttagttaataaaccctattcctcttcaattcttccctttctcgggcattttaaccaaatcgtagggtttttgcttctcttgtttgtttcagCGACTACACGTTCGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTC

Basic information

species Glycine max
transcript GLYMA17G07040.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07040.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 2
gttagtttatttagttaataaaccctattcctcttcaattcttccctttctcgggcattttaaccaaatcgtagggttttt-gcttctcttgtttgtttcagCGACTACACGTTCGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTC
                  ||  |  |  ||   ||   |   | |     | ||    | |    |||  ||     | |  | ||   |||| | |||||| || | | | ||||| |||||||  || ||||||||||| || |||||| | |||||  ||||||| ||||| || |||||||| ||||||||||| |||
-----------------gtacgctttcctctgtttttgtggatgctagggttggctggtcttgg-aaactgtgtttctctaaggtttggttgtgtttttcagGGAGTGCGCCTTCGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323206|gb|FK016337.1|FK016337
EST:     TTAGGCCACCTTCTCAATCTTCCTTCACAGCCGG                         CGACTACACGTTCGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCT
genomic: TTAGGCCACCTTCTCAATCTTCCTTCACAGCCGGgttagtttat ... tttgtttcagCGACTACACGTTCGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcgggcattttaaccaaatcgtagggtttttgcttctcttgtttgtttcagCGACTACACGTTCGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTC
           ttttaac  putative branch site (score: 2)
                              tttttgcttctcttgt  putative PPT
          attttaa  TA-rich tract