Sequence
atgc intronic sequence ATGC exonic sequence...taaaaattaaaactcatggttgatcagactagattatacattttgtacgtaaatatttttggctaaactaatacatgtaatgtaacattgagttgagcagAAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGACACGATAGGGTACGAGCTGAAAAACCTGAAGAAGCTATCAGTGAACTCC
Basic information
species | Glycine max |
transcript | GLYMA17G06490.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6502424|gb|AW203797.1|AW203797EST: GTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAG AAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGA
genomic: GTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAGgttcaccttc ... agttgagcagAAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGA
EST:
gi|21602647|gb|BQ612978.1|BQ612978EST: GTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAG AAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGA
genomic: GTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAGgttcaccttc ... agttgagcagAAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacgtaaatatttttggctaaactaatacatgtaatgtaacattgagttgagcagAAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGACACGATAGGGTACGAGCTGAAAAACCTGAAGAAGCTATCAGTGAACTCC
aaatattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaaattaaaactcatggttgatcagactagattatacattttgtacgtaaatatttttggctaaactaatacatgtaatgtaacattgagttgagcagAAGCTTAGAAGAGTTGAATGCGAACTTCAACAAGTTGATCCAGCTGCCAGACACGATAGGGTACGAGCTGAAAAACCTGAAGAAGCTATCAGTGAACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- -aaattaaa
- - - - - - ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa