Sequence
atgc intronic sequence ATGC exonic sequencegttttgcttcttccatgtttaaattgtacattcacctgcaacaatttttctgttcttttatttatggtcttgattttgacggttcaggttttattgtctgctttaatgagtgttttatttgttctgcagTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTG
Basic information
species | Glycine max |
transcript | GLYMA17G06120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------gttttgcttcttccatgtttaaat---tgtacat-tcacctgcaacaattt-ttctgttcttttatttatggtcttgattt-tgacggttcaggttttatt----gtctgctttaatgagtgttttat------ttgtt-ctgcagTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTG
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gtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4286392|gb|AI441040.1|AI441040EST: TAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAG TATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGA
genomic: TAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAGgttttgcttc ... tgttctgcagTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgacggttcaggttttattgtctgctttaatgagtgttttatttgttctgcagTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTG
ctttaat putative branch site (score: 4)
ttttattt putative PPT
ttttatttgtt TA-rich tract