1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagattttttatttttattattcggagcaatctggttttattattactgaaattgctgttcgtgttcttgttttgtgttggatatgattgcaacaggatgttattgctatctgttcaattttttaatggccttatatttttttttccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTAC
species | Glycine max |
transcript | GLYMA17G06110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGAEST: gi|17400832|gb|BM177614.1|BM177614
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGAEST: gi|5606768|gb|AI900866.1|AI900866
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGAEST: gi|19348227|gb|BM892759.1|BM892759
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTT ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
gttattgctatctgttcaattttttaatggccttatatttttttttccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTAC
ttttaat putative branch site (score: 3)
ccttatattttttttt putative PPT
aattttttaatggcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttttatttttattattcggagcaatctggttttattattactgaaattgctgttcgtgttcttgttttgtgttggatatgattgcaacaggatgttattgctatctgttcaattttttaatggccttatatttttttttccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA