1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttgttgtcattgtacttgttctaccccccattttaaatgattcttttttatgaaattgcactgactaagttatgattttttttatgcttctttttatagAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCA
species | Glycine max |
transcript | GLYMA17G04930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCT AGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGAEST: gi|151411775|gb|EV281586.1|EV281586
genomic: TGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCTgtaagtgtga ... ctttttatagAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGA
EST: TGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCT AGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGA
genomic: TGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCTgtaagtgtga ... ctttttatagAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGA
tttttatgaaattgcactgactaagttatgattttttttatgcttctttttatagAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCA
cactgac putative branch site (score: 2)
ttttttttatgcttct putative PPT
ttatgattttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttgtcattgtacttgttctaccccccattttaaatgattcttttttatgaaattgcactgactaagttatgattttttttatgcttctttttatagAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- tgttgtc
- - - - - - gtacttg
- - - - - - - - - - -ctacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactg