Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

Basic information

species Glycine max
transcript GLYMA17G02200.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G083497_T04 (Zea mays), 3'ss of exon 1
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
                   |  | |  || |  |     ||||  |||  |   |  |   ||  | | |     || |  | || | |||   |||||||||| || ||||| ||||| || ||||||||||| ||||| || || ||||| ||| ||||||| ||||| ||||| || || || ||||| |||||
----------------gttagttctcaatctcgtgccccatttcaatt--ggcagcattccgagga-tacgtacctgattag-tgctatattattagGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTGTGGTGGAACTGAACGGCAGACTAAACAAATGCGGTGTAATTAGCCCCCG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G018228_T04 (Zea mays), 3'ss of exon 2
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
         ||||   ||      |  |  ||||     ||||  |||  | ||   | |    | | ||   ||  |     || | ||| | |||| ||||| || ||||| ||||| || ||||||||||| ||||| || |||||||| ||  |||| || |||||||| || ||||| |||||||| || ||
--------gttagccctc-----ctcaaccttat-gcccatttgaatt--gcttcattctgaggatacgcccctgattattattgttctatat-tagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
            || | | |    | ||  ||||    | |||  ||   |  |   |   ||  |         || ||       |  | |||||| ||||| |||||||| ||||| |||||||||||| |  | || || |||||||| ||| | ||||| || ||||||||||| || || || || || ||
------------gttagctagcactcgaccttatgccctgtttcaat---gactccattccgagga-catgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G328578_T01 (Zea mays), 3'ss of exon 2
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
         ||||   ||      |  |  ||||     ||||  |||  | ||   | |    | | |    ||  |     || | ||| | |||| |||||  | ||||| ||||| || ||||||||||| ||||| || |||||||| ||  |||| || |||||||| || ||||| |||||||| || ||
--------gttagccctc-----ctcaaccttat-gcccatttgaatt--gcttcattctgaggatacgtccctgattattattgttctatat-tagGCTACATTAGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaa--aatgctgttgtgttcgga----tgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
         ||||| |||    |||  ||||| ||    | || |    ||   |   || |     ||| ||  || ||   ||    ||   | | |  ||| || ||| | |||||| |||||||||| ||||| || ||||| |  || || ||||| |||||||| || ||||||||||||||  | || ||||| ||
--------gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaatagttctcaattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------gtatatctcttagtaatcaaagttttgatttt---attatttatttttatttagtttgtgtattgaaaaatgc-tgttgtgttcggatgattta--tgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
                          |  | | ||    |  |     | || | |||   ||| ||| ||||| ||   | |||  |||   |    | | || |  |    | ||||   | |  ||| ||||| ||||||||||||||||||||||| |||||| |||| || || || |||||| |||| || ||||| ||||| ||||||||||| ||||||||
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------gtatatctcttagtaatcaaagttttgattttattatttatttttatt--tagtttgtgtattgaaaaatgctgttgt-gttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
                                            |   | |||      |  | || | ||||  | |||   |    |||  || ||| | |  |   |  ||      |  |        ||    || |||||| ||||| || ||||||||||| ||||| |||||  | || ||||| ||||||||  |||| || ||  ||||||||||||| || |||||||| ||
gttagtgcatgtagcacctattttatttattctcttcgatttctttcgtttctactgttttgatgtgtcgattcaagtatgagtgaaaattaataatttatattgtttgatgtgtcaacatcatctctgcctttggcctgcagGATATATCGGTGAATTTGAGTATGTAGATGATCACAGATCAGGAAAAATTGTGGTTGAGCTGAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S1_304V6.1 (Physcomitrella patens), 3'ss of exon 1
---gtatatctcttagtaatcaaagttttgattttattatt-tatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
     ||  || |||      || |  ||| || | | | | ||     ||   |    | ||    || ||||  || | |     | ||   |  | |||||| || |||||||||||    |||||||||||||| || || ||||||||||| ||  ||||||||||| |||||||||| || ||||| ||||||||
gacacatgccttttatgttggaacgaattgtttctttaaatgtaaaagaatcctgcggatttacactaacatgcacttttctgtatgtcatccct-cgcagGATATATTGGAGAGTTTGAACTGGTTGATGACCACAGAGCGGGGAAAATCGTGGTGGAGCTGAACGGTAGATTGAACAAGTGCGGTGTTATCAGTCCCCG

upper sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S115_101V6.1 (Physcomitrella patens), 3'ss of exon 1
gtatatctcttagtaatcaaagttttgattttattatttatttttatttag------tttgtgtattgaaaaatgctgttgtgttcggatg-atttatgtgt---agGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
       |  ||||||   ||  | | |  |  | || |   |  ||  ||      ||  ||   |  ||  ||  ||| | ||   ||  |  |||   |   ||| ||||| |||||||||||   ||| |||||||||||||| || ||||| ||||| ||  ||||||| ||  ||||||||||||| || || ||||||||
-------taatagtaagggaacatgtaacgtagtcatgttggtggatcgagcgtcctttcatgagcttgaacctgacgttcttttaaaatatacatattcatttcagGCTACATTGGAGAGTTTGAACTTGTGGATGACCACAGGGCAGGGAAAATTGTGGTGGAGCTGAACGGCAGGTTGAACAAGTGTGGTGTGATCAGTCCCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308367|gb|CD393570.1|CD393570
EST:     GCCATCCTCCAAAGTCATGATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|18040254|gb|BM308548.1|BM308548
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|298175254|gb|HO018135.1|HO018135
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTCGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|7693041|gb|AW761139.1|AW761139
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193570814|gb|FK529497.1|FK529497
EST:     TGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATG-CCACAGGGCTGGTAAAATCG
genomic: TGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208281178|gb|GE079780.1|GE079780
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGG
EST: gi|208109741|gb|GD905359.1|GD905359
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|151394155|gb|EV264026.1|EV264026
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193414539|gb|FK379275.1|FK379275
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|151409518|gb|EV279326.1|EV279326
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|58024827|gb|CX711568.1|CX711568
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|207709338|gb|GD691030.1|GD691030
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|192322409|gb|FK014890.1|FK014890
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|31464244|gb|CD406272.1|CD406272
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCATTAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208284946|gb|GE086922.1|GE086922
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208318756|gb|GE112959.1|GE112959
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193717612|gb|FK651694.1|FK651694
EST:     TGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: TGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|213589975|gb|DB981437.1|DB981437
EST:     ATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACAACAGGGCTGGTAAAATCG
genomic: ATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|31460475|gb|CD402443.1|CD402443
EST:     GTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|15286390|gb|BI470281.1|BI470281
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193342091|gb|FK307653.1|FK307653
EST:     GCCATCCTCCAAAGTCGTTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCCGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|192318303|gb|FK005807.1|FK005807
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208112392|gb|GD913721.1|GD913721
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|26060150|gb|CA803064.1|CA803064
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|18730294|gb|BM525798.1|BM525798
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|151405179|gb|EV274993.1|EV274993
EST:     GCCATCCTCCAAAGCCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193624039|gb|FK573891.1|FK573891
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|58020591|gb|CX707333.1|CX707333
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|14259906|gb|BG882814.1|BG882814
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208031659|gb|GD831209.1|GD831209
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|298174142|gb|HO017478.1|HO017478
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|7590528|gb|AW706278.1|AW706278
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208125263|gb|GD922813.1|GD922813
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|207808586|gb|GD777241.1|GD777241
EST:     CAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: CAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|162286176|gb|FC456624.1|FC456624
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|298199356|gb|HO042719.1|HO042719
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|4260154|gb|AI416650.1|AI416650
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|207720071|gb|GD702570.1|GD702570
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|12774192|gb|BG239119.1|BG239119
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193472832|gb|FK438297.1|FK438297
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|31469860|gb|CD411888.1|CD411888
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|31472647|gb|CD414675.1|CD414675
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTNGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|18039835|gb|BM308129.1|BM308129
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|7685460|gb|AW756108.1|AW756108
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|7684785|gb|AW755433.1|AW755433
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|207704148|gb|GD684556.1|GD684556
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|17021198|gb|BM092232.1|BM092232
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|16996844|gb|BM086216.1|BM086216
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|151396941|gb|EV266814.1|EV266814
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193595617|gb|FK550492.1|FK550492
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|192324575|gb|FK016466.1|FK016466
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193629885|gb|FK576019.1|FK576019
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208113169|gb|GD912054.1|GD912054
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|6845790|gb|AW348080.1|AW348080
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|37996867|gb|CF808456.1|CF808456
EST:     CAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: CAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|192328798|gb|FK023228.1|FK023228
EST:     CCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: CCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|208264887|gb|GE063423.1|GE063423
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|213590230|gb|DB963821.1|DB963821
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|192308383|gb|FK000907.1|FK000907
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACG                         GATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
EST: gi|193437788|gb|FK400505.1|FK400505
EST:     GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCACG                         GATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG
genomic: GCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCACGgtatatctct ... ttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG
               tattgaaaaat  TA-rich tract