1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtactcatgttaaatatacaaatcattgaggggattttaaattaatgaattgtttccttactgtaacatcaataaaggattcttattgtcaccggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGT
species | Glycine max |
transcript | GLYMA17G01550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|5058503|gb|AI736914.1|AI736914
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|20815044|gb|BQ299522.1|BQ299522
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|120530557|gb|EH258690.1|EH258690
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|120534357|gb|EH262490.1|EH262490
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|120534528|gb|EH262661.1|EH262661
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|31561841|gb|CD487679.1|CD487679
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|14999821|gb|BI320635.1|BI320635
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACCATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCCACACCCTGACAAAEST: gi|37996377|gb|CF807966.1|CF807966
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACC-TGACAAA
EST: ATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCEST: gi|120533743|gb|EH261876.1|EH261876
genomic: ATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
EST: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAG GGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
genomic: GTGATGTGTCTTGGCACATCCACGATGAGAGATCCCTACTTGCTCTGCAGgtcatttaga ... accggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGC
tgaattgtttccttactgtaacatcaataaaggattcttattgtcaccggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGT
atcaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcatgttaaatatacaaatcattgaggggattttaaattaatgaattgtttccttactgtaacatcaataaaggattcttattgtcaccggtgcagGGTCCTCTTGCTGCCCCCGTTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT