1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgttcgtttgtttctcctcataagcaaaccgtccatgctctattatattcttaactcttaaggatgttaattatgcatttatgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATATCCAAGGTATTCCTTGGGATAGACTTAGCATTAGTCGTGAGAAGTATA
species | Glycine max |
transcript | GLYMA17G00740.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|209697566|gb|BW660573.1|BW660573
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|213607081|gb|DB966986.1|DB966986
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|192317031|gb|FK007826.1|FK007826
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|213587960|gb|DB957433.1|DB957433
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|209722848|gb|BW682907.1|BW682907
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|151404558|gb|EV274372.1|EV274372
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: CCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|192319504|gb|FK009486.1|FK009486
genomic: CCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|192317030|gb|FK007825.1|FK007825
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|254340112|gb|GR858237.1|GR858237
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATEST: gi|209704179|gb|BW664797.1|BW664797
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
EST: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATG GAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
genomic: TTGGTGATTCAGAGTCCGAATCAGATGACGATGATGAATATGACTCCATGgttcgttcgt ... tgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGAT
gctctattatattcttaactcttaaggatgttaattatgcatttatgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATATCCAAGGTATTCCTTGGGATAGACTTAGCATTAGTCGTGAGAAGTATA
ttaattatgcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttcgtttgtttctcctcataagcaaaccgtccatgctctattatattcttaactcttaaggatgttaattatgcatttatgttgggcagGAAAATCGGATGACAGATACCTCTGCTGCAGAAGCCAGGAAAGGAAAGGATATCCAAGGTATTCCTTGGGATAGACTTAGCATTAGTCGTGAGAAGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT