1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacaaaattaaaaattaaaaatttccctatttccgattcttgttcgttatttcttataggattaagtcaacaactattaacgaacgttgtattctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTGTCAATGCAGCCTTTTTGGCTGCTCTTTACAGTGATTATCTCGATGCTGC
species | Glycine max |
transcript | GLYMA17G00710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTGEST: gi|8825948|gb|BE209678.1|BE209678
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTAGEST: gi|192317016|gb|FK010919.1|FK010919
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTGEST: gi|298195451|gb|HO039282.1|HO039282
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTGEST: gi|26047244|gb|CA784103.1|CA784103
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaaaa ... tctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTG
tatttcttataggattaagtcaacaactattaacgaacgttgtattctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTGTCAATGCAGCCTTTTTGGCTGCTCTTTACAGTGATTATCTCGATGCTGC
tattaac putative branch site (score: 1)
aactattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaaaattaaaaattaaaaatttccctatttccgattcttgttcgttatttcttataggattaagtcaacaactattaacgaacgttgtattctgcaccagGTGGCTTGATTCAATTGAACCATGGCAGGCCTCAGCCTCTCCAATATGTTGTCAATGCAGCCTTTTTGGCTGCTCTTTACAGTGATTATCTCGATGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC