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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttacatcacgagggttcaatttgatttgaaactacataatggttagttactgattacataaattctgatcttggtttttccattattctattaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCT

Basic information

species Glycine max
transcript GLYMA17G00670.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00670.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g02080.t01 (Vitis vinifera), 3'ss of exon 2
gttacatcacgagggttcaatttgatt--tgaaactacataatggttagttactgattacataaattctgatcttggttttt-ccattattctattaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCT
     |  |      |   ||| ||||    | ||  |||     |    ||     ||  ||  | || |  |||   ||  |  ||||  ||||   | ||||||||||||||||||| || ||||||| |||||| || ||||| ||||||||||||||||| || || || |||||||| || | ||| ||||| ||||
---ctaggatagtactctgattcgattaacaatacagcatcgaactgctctatgtcgtatctatgtgctaactttgtcattggcttttatattattgtactagCAATGGGACTCTGATCTTGTAGAAGCCAAGTACATCAAGGATCTCGAAGACAACCTCAGCATCATCCGCCTCAGGTTTGGAGAGAGCTCTAAGCCCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204012|gb|BE330236.1|BE330236
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|209705035|gb|BW653297.1|BW653297
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGGTGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|298173285|gb|HO016621.1|HO016621
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|31309556|gb|CD394759.1|CD394759
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGCCAG                      
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGC-AA---AGgtgaatacca ... attaagc
EST: gi|9203934|gb|BE330158.1|BE330158
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|192315505|gb|FK009685.1|FK009685
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATTTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|192315504|gb|FK009684.1|FK009684
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|151402796|gb|EV272609.1|EV272609
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|151402065|gb|EV271878.1|EV271878
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTCGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|5676828|gb|AI937958.1|AI937958
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|51335509|gb|CO979375.1|CO979375
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
EST: gi|31306636|gb|CD391839.1|CD391839
EST:     TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAG                         CAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC
genomic: TCTCTCCCCAACAGTTCATCACAGTGGCCAATGCCATTGATGCTGCAAAGgtgaatacca ... attaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttactgattacataaattctgatcttggtttttccattattctattaagccagCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTGAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCT
                                         ttctatt  CT-rich tract
                                     attattctattaa  TA-rich tract