1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taagttagatttttgtcattattttgctttatcgtcgtctaacacaatactacttgctttactgaactccaaatatgtgccctaaaattgtgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCTGCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATA
species | Glycine max |
transcript | GLYMA17G00560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|192322904|gb|FK014835.1|FK014835
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|7146388|gb|AW508310.1|AW508310
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|298177377|gb|HO027158.1|HO027158
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|298194005|gb|HO040653.1|HO040653
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|192298362|gb|FG992122.1|FG992122
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|207721235|gb|GD702348.1|GD702348
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|151410757|gb|EV280572.1|EV280572
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCEST: gi|151407032|gb|EV276847.1|EV276847
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
EST: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAG GTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
genomic: ATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGgtaagctcaa ... tgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATC
aatactacttgctttactgaactccaaatatgtgccctaaaattgtgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCTGCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATA
ccctaaa putative branch site (score: 3)
taaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagttagatttttgtcattattttgctttatcgtcgtctaacacaatactacttgctttactgaactccaaatatgtgccctaaaattgtgttacacagGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCTGCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - tgcttta
- - - - - - - - - - - - - - - - - - - ctaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctaaa