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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactcatccatcttattagctctttctattttggcagtcttgctgtttttacatatagctttagacttttgctgttttatgttgccagTCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAA

Basic information

species Glycine max
transcript GLYMA17G00490.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------gtgactcatccatc--ttattagctctttctattttggcagtcttgctgtttttacatatagctttagacttttgctgttttatgt-tgccagTCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAA
             ||  |   |  ||   || ||| |  |  ||   |||| |||   | || | ||| || | | |      ||||  | | |    |    |||| |||| || ||||||||||||||||||||||| ||||| |||||||| || || ||  ||||||||                                 
gtaattgaagttagttgccagtatattagttcttaacaatgactggattggaagta--gttgctattatattttgttcatttttttttttatctctaatacttcagTTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAAAATATCCGACAGGAACGCAAAAAG---------------------------------

upper sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 6
gtgactcatccatcttattagctctttctattttggcagtcttgctgtttttacatatagctttagacttttgc---------tgttttatgttgc-cagTCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAA
|| | |  |  || | || |  |   |||    |      |||  ||| ||||  | |   ||| |  | | ||         | || |  |||   |||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||                                 
gtcaattttttatgtaatcacttacctctggacttcagtgcttattgtgtttagtttttctttttgtatatggcattgaaaaatattgtgagttttgcagTTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAG---------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagtcttgctgtttttacatatagctttagacttttgctgttttatgttgccagTCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAA
          tgtttttacatata  TA-rich tract