1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaccatgtttatcctcatatctataatggtaatctgagtttggttttatcttatatttgcattattattctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATG
species | Glycine max |
transcript | GLYMA17G00470.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|209713269|gb|BW684356.1|BW684356
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|213589446|gb|DB973182.1|DB973182
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|213599134|gb|DB962227.1|DB962227
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|192329687|gb|FK023275.1|FK023275
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|298185664|gb|HO030877.1|HO030877
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGGGAGCAATGCCATTEST: gi|5126554|gb|AI748290.1|AI748290
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|12773474|gb|BG238401.1|BG238401
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|192301560|gb|FG994772.1|FG994772
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTEST: gi|9899280|gb|BE608248.1|BE608248
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
EST: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAG GTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
genomic: GTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGgtaccatgtt ... attctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATT
tataatggtaatctgagtttggttttatcttatatttgcattattattctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATG
ttattctccc CT-rich tract
ttttatcttatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatgtttatcctcatatctataatggtaatctgagtttggttttatcttatatttgcattattattctcccagGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA