1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcacctcaatgcttctaaaacaattttgtaccgtatcagttcatatctgtcattaataatttgattgactgtgaattatcatgtttctaatgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATGTGCAACTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGATCAAG
species | Glycine max |
transcript | GLYMA16G34660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|192302694|gb|FG993714.1|FG993714
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|22524321|gb|BU083132.1|BU083132
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|21676111|gb|BQ628462.1|BQ628462
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: GAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|6072588|gb|AW101975.1|AW101975
genomic: GAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|20813952|gb|BQ298430.1|BQ298430
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: CAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|22524199|gb|BU083010.1|BU083010
genomic: CAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|22524381|gb|BU083192.1|BU083192
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|23732021|gb|BU764165.1|BU764165
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|151400455|gb|EV270269.1|EV270269
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGTATEST: gi|192302695|gb|FG993715.1|FG993715
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|15337017|gb|BI497673.1|BI497673
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: GGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATEST: gi|151400687|gb|EV270501.1|EV270501
genomic: GGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
EST: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG GCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
genomic: TTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAGgtaagaacat ... atgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAAT
atctgtcattaataatttgattgactgtgaattatcatgtttctaatgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATGTGCAACTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGATCAAG
ttctaat putative branch site (score: 2)
tcattaataatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcacctcaatgcttctaaaacaattttgtaccgtatcagttcatatctgtcattaataatttgattgactgtgaattatcatgtttctaatgtttgcagGCTCATGCGGATGATGATTCTGATCATATTGTGGAGCTTGCTTCTGGGAATGTGCAACTTATTACTACCAAAGAATCTTGGGACCAAAAGTTGGATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- cacctca
- - - - - tgcttct
- - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - tctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactgtg