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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtttattatatttttatttaaagggttttaatgttgcgtttgtttatgtttttgtgtgtgtgtgtgtttgtgtgtttgtgtttttcaattatgattatgagactgtgtgtgtttcacttgatcatttttatttttctttgttctcttggttaattgaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGATAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT

Basic information

species Glycine max
transcript GLYMA16G34350.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 2
gtactgtttattatatttttatttaaagggttttaatgttgcgtttgtttatgtttttgtgtgtgtgtgtgtttgtgtgtttgtgtttttcaattatgattatgagactgtgtgtgtttcacttgatcatttttatttttctttgttctcttggttaattgaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGATAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT
                                                              || | ||||| | ||| | | | | | ||  || ||| | | | | |||   |  |  ||  ||  |       ||||  || |  |  ||||  | ||     |  ||||||| ||||||||||| |||||| |||||||   ||||||||||||||| || ||||| || ||||| || || || |||||  | ||  ||| ||| |
--------------------------------------------------------------gt-tttgtgtctctgtctctctctctctc--ttttgagtttaaaa-tgta-attctgaacacgaaaagagaggattttgattttcgttgtggt--actgttttgtgtagGCTCAACATGAGAGAGCAGATAATAGTGCACTAAAGGCAGAGAATGATAAAATTCGTTGCGAAAACATTGCTATTAGAGAAGCTCTCAAGCATGCTATAT

upper sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 2
gtactgtttattatatttttatttaaagggttttaatgttgcgtttgtttatgtttttgtgtgtgtgtgtgtttgtgtgtttgtgtttttcaattatgattatgagactgtgtgtgtttcacttgatcatttttatttttctttgttctcttggttaattgaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGATAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT
                                                        |   |  ||||  | ||   |||  || |||| ||| |  || || ||    | ||    | | | ||  |   |  | |  || | ||  |||       |   | |  || |||| || || |||||||||||||| ||||| || || |  ||||| |||||||| |||||||| ||||||||||| || || ||  | || ||||| || |
-------------------------------------------------------gtaaggcttgtgcttattctcgtg--tgagtttctcattcttgcttctgg--ttatgctattcttatttagttgctgatttccttgtatgcactc-------acacacctttttagGCCCAACACGAGAGAGCTGATAACTGTGCTCTTCGTGTGGAGAACGATAAGATCCGTTGTGAAAACATAGCCATTAGAGAGGCTCTCAAGAATGTGATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacttgatcatttttatttttctttgttctcttggttaattgaacaattcagGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGATAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCT
                                    ggttaat  putative branch site (score: 4)
      ttgatcatttttattt  TA-rich tract