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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctttctctactcttatgctcgtagtttttctttttcttattttttaaaataatttttgtgttttttttattgattttaaatgttttggtatttggtttgtgtttgttcgatttgatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTCAGGCGGCGGAG

Basic information

species Glycine max
transcript GLYMA16G33380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276828|gb|BI942066.1|BI942066
EST:     GCACGCGCCAGTTCTAGTTCTCA                         AGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
genomic: GCACGCGCCAGTTCTAGTTCTCAgtaagttctt ... gatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
EST: gi|16281961|gb|BI944761.1|BI944761
EST:     CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCA                         AGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
genomic: CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCAgtaagttctt ... gatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
EST: gi|16278542|gb|BI942959.1|BI942959
EST:     CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCA                         AGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
genomic: CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCAgtaagttctt ... gatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
EST: gi|24206236|gb|BU965489.1|BU965489
EST:     CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCA                         AGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
genomic: CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCAgtaagttctt ... gatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
EST: gi|162286128|gb|FC456630.1|FC456630
EST:     CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCA                         AGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC
genomic: CGGAATATTTTGAATCCAGGAAATCATGCACGCGCCAGTTCTAGTTCTCAgtaagttctt ... gatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgattttaaatgttttggtatttggtttgtgtttgttcgatttgatttcgcagAGGACTCTTTGAAACGGGAGTCTGGATCTAAGGTCCGCTATGCTATTATTCAGGCGGCGGAG
     ttttaaatgtttt  TA-rich tract