1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgtgtgtttctagaaccttccattacttttgtggaatcgaatttcggttcattcattcataaattgtgttgttttgattgtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTTCAAATTCCCCGAAAACAGTGTCGAGCTTTATGCTGAGAAGGTCAACAA
species | Glycine max |
transcript | GLYMA16G33240.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|20812287|gb|BQ296765.1|BQ296765
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|254323365|gb|GR835866.1|GR835866
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|24135528|gb|BU926038.1|BU926038
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|208306205|gb|GE106622.1|GE106622
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|21995034|gb|BQ786562.1|BQ786562
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|4313574|gb|AI460693.1|AI460693
genomic: GATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAG GTGAGAAGGGAAGGAGAATTANGGGAACTTACCTCAGTGGTGCAGAAGAGGEST: gi|6566862|gb|AW234494.1|AW234494
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTA-GGGAACTTACCTCAGTGGTGCAGAAGAGG
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|209709418|gb|BW668360.1|BW668360
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGGGATCATCATCAGAGCCACCAGAACCCAAGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTEST: gi|4313934|gb|AI461053.1|AI461053
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAG GTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
genomic: GATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgt ... gtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGT
aatcgaatttcggttcattcattcataaattgtgttgttttgattgtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTTCAAATTCCCCGAAAACAGTGTCGAGCTTTATGCTGAGAAGGTCAACAA
ttttgat putative branch site (score: 4)
ttttgattgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgtgtttctagaaccttccattacttttgtggaatcgaatttcggttcattcattcataaattgtgttgttttgattgtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTTCAAATTCCCCGAAAACAGTGTCGAGCTTTATGCTGAGAAGGTCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG