1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagttacccttttcttttaatcttcttttattacattttacttttaacaattaaatgtcattcaacaaggggagcaacaacaactctatctgattttaatgtgattttttatttgcagGTGTTTCCTCCAGTGTGGAGTTTATCAGGCCCCTTCTATCAGCTTCTAAGTCATATTCTCTTGGTTTGAAG
species | Glycine max |
transcript | GLYMA16G33060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGGGGCTGCCGCTACTTTCTTCTGCATTATGGGATCCTTCTCATAACT GTGTTTCCTCCAGTGTGGAGTTTATCAGGCCCCATCTATCAGCTTCTAAGTEST: gi|213608138|gb|DB963040.1|DB963040
genomic: CATGGGGCTGCCGCTACTTTCTTCTGCATTATGGGATCCTTCTCATAACTgtgagttacc ... ttatttgcagGTGTTTCCTCCAGTGTGGAGTTTATCAGGCCCCTTCTATCAGCTTCTAAGT
EST: CATGGGGCTGCCGCTACTTTCTTCTGCATTATGGGATCCTTCTCATAACT GTGTTTCCCCCAGTGTGGAGTTTATCAGGCCCCATCTATCAGCTTCTAAGT
genomic: CATGGGGCTGCCGCTACTTTCTTCTGCATTATGGGATCCTTCTCATAACTgtgagttacc ... ttatttgcagGTGTTTCCTCCAGTGTGGAGTTTATCAGGCCCCTTCTATCAGCTTCTAAGT
aacaaggggagcaacaacaactctatctgattttaatgtgattttttatttgcagGTGTTTCCTCCAGTGTGGAGTTTATCAGGCCCCTTCTATCAGCTTCTAAGTCATATTCTCTTGGTTTGAAG
ttttaat putative branch site (score: 3)
ttttttattt putative PPT
tatctgattttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttacccttttcttttaatcttcttttattacattttacttttaacaattaaatgtcattcaacaaggggagcaacaacaactctatctgattttaatgtgattttttatttgcagGTGTTTCCTCCAGTGTGGAGTTTATCAGGCCCCTTCTATCAGCTTCTAAGTCATATTCTCTTGGTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG