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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtataatttttgttgtctgtttatgctttatgcttgctattatgtataatttcactgtccttcttcataaattgacaatatgtagAGACTATTCAAAGACCTATGCTCGGTCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAA

Basic information

species Glycine max
transcript GLYMA16G32870.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32870.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G51720.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttgtgtataatttttgttgtctgtttatgcttta-tgcttgctattatgtataatttcactgtcctt--cttcataaattgacaatatgtagAGACTATTCAAAGACCTATGCTCGGTCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAA
            | ||||| |||     || || || |  |||  | | ||  ||||   |  |  |    ||  | |  |      |||| ||||||||||| |||||||||||  || | | ||| | |||||||  ||| || |||||||||||||||||||| |||||| |  ||||||| |||||||||
-----------gtatttgtcgtcctagaatactatagtatttgtcact-tggttaatcatatagatcccaactgtacatgtgtctgttatgcagAGACTATTCCAAGACCTATGCAAGGGCGAAATACTTTGATGAATTAAAGCCTTGGAATGAAAGGTGTGATGTGGCATTTCCTTGTGCTTCTCAGAATGAA

upper sequence: GLYMA16G32870.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g02530.t01 (Vitis vinifera), 3'ss of exon 10
----------------gtttgtgtataatttttgttgtctgtttatgctttat-------gcttgctattatgt-ataatttca--ctgtccttcttcataaattgacaatatgtagAGACTATTCAAAGACCTATGCTCGGTCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAA
                  || | | |  |  || ||  |    | |  |||||        |||   |  || | |||| ||||   | | |||||||||| ||     || || |||||||||||||| || |||||||| || |  || ||||||||||||||||| |||| |||||||||||||||||||||| |  ||||||| |||||||||
gttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcagAGACTATTCAAAAACTTATGCTCGATCTAAGTACTATGATGAAGCAAAACCTTGGAGTGAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgctattatgtataatttcactgtccttcttcataaattgacaatatgtagAGACTATTCAAAGACCTATGCTCGGTCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAA
                                       aattgac  putative branch site (score: 3)
       tattatgtataatttc  TA-rich tract