1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acctgttcttagaaggaaaagaaaagaggaggaaagaaaatgcttgcttgaactactagaatagaaatcacatcttaattcattgccatctgtttattagGTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAACAATGTTGAGACGTCTGGCATGCGGTTTGACTCTAATGCAAGAACTGCAT
species | Glycine max |
transcript | GLYMA16G32530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGTTGGTATCTCTAGACTGGGAGGTTCATCTGCTTTCATAGGCAAG GTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAACEST: gi|7685312|gb|AW755960.1|AW755960
genomic: TGGCTGTTGGTATCTCTAGACTGGGAGGTTCATCTGCTTTCATAGGCAAGgtgtagtttt ... tgtttattagGTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAAC
EST: TGGCTGTTGGTATCTCTAGACTGGGAGGTTCATCTGCTTTCATAGGCAAG GTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAACEST: gi|15815232|gb|BI787507.1|BI787507
genomic: TGGCTGTTGGTATCTCTAGACTGGGAGGTTCATCTGCTTTCATAGGCAAGgtgtagtttt ... tgtttattagGTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAAC
EST: TGGCTGTTGGTATCTCTAGACTGGGAGGTTCATCTGCTTTCATAGGCAAG GTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAAC
genomic: TGGCTGTTGGTATCTCTAGACTGGGAGGTTCATCTGCTTTCATAGGCAAGgtgtagtttt ... tgtttattagGTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAAC
gcttgaactactagaatagaaatcacatcttaattcattgccatctgtttattagGTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAACAATGTTGAGACGTCTGGCATGCGGTTTGACTCTAATGCAAGAACTGCAT
tcttaat putative branch site (score: 3)
tctgttt putative PPT
ttaattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgttcttagaaggaaaagaaaagaggaggaaagaaaatgcttgcttgaactactagaatagaaatcacatcttaattcattgccatctgtttattagGTTGGAGCAGATGAATTTGGGTACATGTTGGGTAACATTTTAAAGCAGAACAATGTTGAGACGTCTGGCATGCGGTTTGACTCTAATGCAAGAACTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - aagaaaa
- - - - - - - - - - - - -gaggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgcc