1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttttggttggaaattttaaatggagggtttatttcctgcgtttatctatgttttctctagtgaaaagtttcaaattttgttgtttcatttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGTTTGG
species | Glycine max |
transcript | GLYMA16G32360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|207685187|gb|GD669079.1|GD669079
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|213620089|gb|DB965395.1|DB965395
genomic: TGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|151395176|gb|EV265047.1|EV265047
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTGCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|6482005|gb|AW201276.1|AW201276
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|4287428|gb|AI441188.1|AI441188
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|213605714|gb|DB972334.1|DB972334
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATEST: gi|193429416|gb|FK394994.1|FK394994
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
EST: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG ACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
genomic: TTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGgtagatatta ... ttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCAT
atctatgttttctctagtgaaaagtttcaaattttgttgtttcatttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGTTTGG
tttcatttactttc CT-rich tract
aaaagtttcaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttggttggaaattttaaatggagggtttatttcctgcgtttatctatgttttctctagtgaaaagtttcaaattttgttgtttcatttactttcagACACTGAGGTGTGCTCACTTTATAGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT