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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattatgcttgctattgatattactattattattttttttgtgaattttttcttttcattttcgaacacttaattatgattgaggtgagattgtattaaatgcttgagtagttggaagctgataagtgattggaattggttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACAGATGTGCATAATCTGATTGAGTTATTGATGAATCAGTTGCTCAAATTGG

Basic information

species Glycine max
transcript GLYMA16G32290.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667699|gb|AW279150.1|AW279150
EST:     CAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
genomic: CAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGGgtatgtatta ... aattggttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
EST: gi|254320245|gb|GR829433.1|GR829433
EST:     ACTTGCAGGGAGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
genomic: ACTTGCAGGGAGGgtatgtatta ... aattggttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
EST: gi|254320244|gb|GR829432.1|GR829432
EST:     CAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
genomic: CAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGGgtatgtatta ... aattggttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
EST: gi|7588829|gb|AW704616.1|AW704616
EST:     CAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA
genomic: CAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGGgtatgtatta ... aattggttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtattaaatgcttgagtagttggaagctgataagtgattggaattggttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACAGATGTGCATAATCTGATTGAGTTATTGATGAATCAGTTGCTCAAATTGG
                            agctgat  putative branch site (score: 4)
     tattaaat  TA-rich tract