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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattatggttattaatttgttttaatgttttttgaatttttccttataattttcaagcacttaattatgagtgaggtgggattgtattaaatgcttgagtagttggaagctgataagtgattggaattagttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGGAAACAGATTTGCTTAATCTGATTGAGTTATTGATGAATCAATTGCTTAAATTGG

Basic information

species Glycine max
transcript GLYMA16G32280.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348491|gb|BI974086.1|BI974086
EST:     CAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGACGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGGAAACA
genomic: CAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGACGGgtatgtatta ... aattagttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGGAAACA
EST: gi|254333908|gb|GR848826.1|GR848826
EST:     CAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGACGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGG
genomic: CAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGACGGgtatgtatta ... aattagttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGG
EST: gi|4397500|gb|AI496497.1|AI496497
EST:     CAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGACGG                         GTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGGAAACA
genomic: CAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGACGGgtatgtatta ... aattagttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtattaaatgcttgagtagttggaagctgataagtgattggaattagttagGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAGAGTTGTGGAAACAGATTTGCTTAATCTGATTGAGTTATTGATGAATCAATTGCTTAAATTGG
                            agctgat  putative branch site (score: 4)
     tattaaat  TA-rich tract