1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctagttgcttgaagaaattttcttccaaatcaccaagtgttttggcatcagtatgggtggcattgatgattgatctttggctgttctgtttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCAGTTGCTTGGACCTGACATGTCAATCAAGATTCTCACCCATTTGGATGAC
species | Glycine max |
transcript | GLYMA16G32240.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAATGCCATGACAGTTCAGATTTGTAGGAAGCTTATTGGAAGAAAAATA GCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCA
genomic: GAAATGCCATGACAGTTCAGATTTGTAGGAAGCTTATTGGAAGAAAAATAgtaagttaga ... ttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCA
gcatcagtatgggtggcattgatgattgatctttggctgttctgtttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCAGTTGCTTGGACCTGACATGTCAATCAAGATTCTCACCCATTTGGATGAC
gattgat putative branch site (score: 4)
ttctgttt putative PPT
tttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagttgcttgaagaaattttcttccaaatcaccaagtgttttggcatcagtatgggtggcattgatgattgatctttggctgttctgtttgttatcagGCTTTGATATTTGGAAATGTCTGAAGTGAGAAACAAAGTGGATTTCATCCAGTTGCTTGGACCTGACATGTCAATCAAGATTCTCACCCATTTGGATGAC
- - gttgctt
- - - - - - - - - - ttcttcc
- - - - - - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat