Sequence
atgc intronic sequence ATGC exonic sequence...acacaactctctgtctttttaagcttgcaagcttgtgaattcagttattcaaatgaagaaatgattggctgaaagtggattttatgttgcaaaattgcagCTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAACCGCATAGGGCCTAGAGTATCAGTGGCATGTTTTTTCACTCTTCATCTCT
Basic information
species | Glycine max |
transcript | GLYMA16G32220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|214005626|gb|DB984634.1|DB984634EST: TGCACAAAGTTCCTGGAGCTCTAGTAGTAAACATTGGAGATCTGCTACAG CTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAAC
genomic: TTCCCCCTGTTCCTGGAGCTCTAGTAGTAAACATTGGAGATCTGCTACAGgtaacttcat ... aaaattgcagCTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAAC
EST:
gi|6667815|gb|AW279266.1|AW279266EST: TTCCCCCTGTTCCTGGAGCTCTAGTAGTAAACATTGGAGATCTGCTACAG CTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAAC
genomic: TTCCCCCTGTTCCTGGAGCTCTAGTAGTAAACATTGGAGATCTGCTACAGgtaacttcat ... aaaattgcagCTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcaaatgaagaaatgattggctgaaagtggattttatgttgcaaaattgcagCTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAACCGCATAGGGCCTAGAGTATCAGTGGCATGTTTTTTCACTCTTCATCTCT
attttatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acacaactctctgtctttttaagcttgcaagcttgtgaattcagttattcaaatgaagaaatgattggctgaaagtggattttatgttgcaaaattgcagCTAATATCCAATGACAAATTCAAAAGTGTGGAGCACCGTGTGCTTGCAAACCGCATAGGGCCTAGAGTATCAGTGGCATGTTTTTTCACTCTTCATCTCT
acacaac
- - - - - ctgtctt
- - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgc