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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcttttttctgcttatttcaggttatacacaaaattaggaaataaaaaaattcaagttttagttttatacctttggacatggtcaccccatttggaagtgttcatgttcttttgtgttcttcaaattttgcttttgaatggttatgacctgacatttttcaaaacggcagTGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTATCTTCCTTATTCATTAGAAACAACATTTCTGTTGGTGCTTCTGGTGCTCT

Basic information

species Glycine max
transcript GLYMA16G32150.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32150.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtttcttttttctgcttatttcaggttatacacaaaattaggaaataaaaaaattcaagttttagttttatacctttggacatggtcaccccatttggaagtgttcatg-ttcttttgtgttcttcaaattttgcttttgaatggttatgacctgacatttttcaaaacggcagTGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTATCTTCCTTATTCATTAGAAACAACATTTCTGTTGGTGCTTCTGGTGCTCT
                                                                       | || |   | |      |  |    |  |      |   || ||||||| ||||    | || ||| ||| |  ||  || |    || ||  ||      ||||||| |||||||| | |||||| ||||||| ||||| || |||||||| || || ||  |||| |||  ||| | ||| |||||||| ||||||||||||||
----------------------------------------------------------------------atgatcctcctagtttgaatttctttgtaagagtccttctctggttcttttttgttagctatatcttgatttggcctgactagg----gatatcgttt----tggcagTGCGGATAGGAGTAATTTACCTGTTGTCAGGATTTGGAGGGAGTGTTCTTTCATCTCTATTTATTCAAAATAGCATCTCTGTTGGGGCTTCTGGTGCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294215|gb|FG986304.1|FG986304
EST:     GTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTG                         TGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTAT
genomic: GTTGAGCCTGGTCTTCATTGGCATTCGTCTTGAACAACAATTTGGGTTTGgtatgtttct ... aaaacggcagTGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttcaaattttgcttttgaatggttatgacctgacatttttcaaaacggcagTGAGGATAGGAATTATTTACTTGTTGTCTGGATTCGGCGGGAGTGTACTATCTTCCTTATTCATTAGAAACAACATTTCTGTTGGTGCTTCTGGTGCTCT
                               acctgac  putative branch site (score: 3)
                                       tttttca  CT-rich tract
                                      atttttcaaaa  TA-rich tract