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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattccaatgatctttttatttttatactgttctactttcaagctcataatattatccattcttaatgttgtgaatattgcttttggtattgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAAACCTGTGAGGCAGAAAATTACTGAGCCTAAGACTCCATATCATCCTATG

Basic information

species Glycine max
transcript GLYMA16G31990.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187321|gb|HO034470.1|HO034470
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|19934517|gb|BQ079547.1|BQ079547
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|151400975|gb|EV270789.1|EV270789
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|151410315|gb|EV280130.1|EV280130
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|192328311|gb|FK020022.1|FK020022
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGATGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|151398424|gb|EV268295.1|EV268295
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|298174454|gb|HO014599.1|HO014599
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
EST: gi|298176240|gb|HO015645.1|HO015645
EST:     TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAA                         GGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA
genomic: TGCCTTGCATACTTTGGTGTTTGAAGAGCTAATCTGTCTACCAAAATGAAgtaatgcaag ... tgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataatattatccattcttaatgttgtgaatattgcttttggtattgcgttgtagGGGACGTGTAAGGTGGGATGAGGCTAATATTGGAGAAATTGAGGCAAACAAACCTGTGAGGCAGAAAATTACTGAGCCTAAGACTCCATATCATCCTATG
               tcttaat  putative branch site (score: 3)
             attcttaat  TA-rich tract