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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcttatataacacaaccgcttgtacaaaacctcattttctctcttttccatttgaaatgctagctattgttattcttgtgccaactgaacttcgaacaatctcttaaagtgattttcttcttggaacagGTCTCATATTCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGAGGGCTTTAAGTCCACTGGAATTCCTAGTGCTATGTGGGACTTAATGGAGC

Basic information

species Glycine max
transcript GLYMA16G30000.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322947|gb|FK016678.1|FK016678
EST:     TAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGACAAG                         GTCTCATATTCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGAG
genomic: TAACTTTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGACAAGgtaaagctta ... cttggaacagGTCTCATATTCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtgccaactgaacttcgaacaatctcttaaagtgattttcttcttggaacagGTCTCATATTCACTTTTGGTATTCTTCTGTGGAATGTTTATCACAGTAGAGGGCTTTAAGTCCACTGGAATTCCTAGTGCTATGTGGGACTTAATGGAGC
                                      ttttcttctt  CT-rich tract
                                     attttctt  TA-rich tract