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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggggtttttagttgcccttctggaaagaatccaatgtatacatatcgtgaatccattgttttagggaaaacaaactgttccattttcaagGTAAATCAAATACTAAGAGAACTCAGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAA

Basic information

species Glycine max
transcript GLYMA16G29860.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29860.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0050g01050.t01 (Vitis vinifera), 3'ss of exon 1
--------gtactggggtt--tttagttgcccttctggaaagaatccaatgtatacatatcgtgaatccattgttttaggg---aaaacaaactgttccattttcaagGTAAATCAAATACTAAGA-GAACTCAGTAGA-GAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAA
        |||| |   ||  |||| |  |  |  || |  | |     || | |  |    | | ||  |  ||  | ||   |   || | ||  |   |||   |  |     |||  | |   | | || ||  |  ||   |  | |  || |  ||  |||||  | | || |     | ||   | |  |||||         
tctccttagtacagaacttgttttattaactttgttgcatggtagtgcttggagaggttctctcattctgtaattagatggtttatgccatattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGAGTTTTTAGTTGCCCTGCTAGCAAGAATCCAATGT-ACACATATCGTGAAT---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888915|gb|BQ742128.1|BQ742128
EST:     GGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAG                         GTAAATCAAATACTAAGAGAACTCAGTAGAGAGTGGCCAGGGAGTTCATAT
genomic: GGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGgtactggggt ... cattttcaagGTAAATCAAATACTAAGAGAACTCAGTAGAGAGTGGCCAGGGAGTTCATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatacatatcgtgaatccattgttttagggaaaacaaactgttccattttcaagGTAAATCAAATACTAAGAGAACTCAGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTGTCCAAAAACTGCAATCACTTTTGTGATGAATTCTGTGAAA
                                          ttccattttc  CT-rich tract
                   attgtttta  TA-rich tract