1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttagtgaaggaggttaaagcattgatccatcttgtaaattattgtttctgtacagtacttttttgcttccactgtatattcttacggcttccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG
species | Glycine max |
transcript | GLYMA16G29860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAG GCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGEST: gi|21888915|gb|BQ742128.1|BQ742128
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
EST: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAG GCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGEST: gi|193523744|gb|FK482203.1|FK482203
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
EST: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAG GCTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGEST: gi|193492066|gb|FK453482.1|FK453482
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
EST: TCACTTTTGTGATGAATTCTGTGAAAGGTTTGGTGTACCAAAACTTCCAG GCTGGGTTAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
genomic: TCACTTTTGTGATGAATTCTGTGAAAGGCTTGGTGTACCAAAACTTCCAGgtaaacatgt ... tccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTG
tttctgtacagtacttttttgcttccactgtatattcttacggcttccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG
ttcttac putative branch site (score: 2)
cttccat putative PPT
tatattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagtgaaggaggttaaagcattgatccatcttgtaaattattgtttctgtacagtacttttttgcttccactgtatattcttacggcttccatgacagGCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - gtgaagg
- - - - - - - - - - - - - - - - - - - - - - gtttctg