1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttaaatctgcttaataattgaatgcctctttgaattcctcacccaaacacactgtaatttagtttaaggactaatgataatttctactgactttgtagATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCAT
species | Glycine max |
transcript | GLYMA16G29740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGAGTGTTATACAG ATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAEST: gi|120528794|gb|EH256928.1|EH256928
genomic: GTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGAGTGTTATACAGgtaattctca ... gactttgtagATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACA
EST: GTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGAGTGTTATACAG ATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACA
genomic: GTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGAGTGTTATACAGgtaattctca ... gactttgtagATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACA
caaacacactgtaatttagtttaaggactaatgataatttctactgactttgtagATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCAT
tactgac putative branch site (score: 1)
tgtaatttagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaatctgcttaataattgaatgcctctttgaattcctcacccaaacacactgtaatttagtttaaggactaatgataatttctactgactttgtagATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - -tctgctt
- - - - - - - - - - -gaatgcc
- - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - -ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - -aacacac