1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttccactagatcttgtatttaactatttcctttcatgttttaaatgtagaagtaattaactattgggtcttaactgctctttgatttgttgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG
species | Glycine max |
transcript | GLYMA16G29660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAG AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTEST: gi|120530896|gb|EH259029.1|EH259029
genomic: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAGgtcagaacta ... tgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
EST: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAG AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTEST: gi|8825950|gb|BE209680.1|BE209680
genomic: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAGgtcagaacta ... tgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
EST: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAG AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTEST: gi|151405059|gb|EV274873.1|EV274873
genomic: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAGgtcagaacta ... tgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
EST: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGGCAATGAAG AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTEST: gi|10234078|gb|BE802966.1|BE802966
genomic: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAGgtcagaacta ... tgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
EST: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAG AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTEST: gi|192294693|gb|FG986542.1|FG986542
genomic: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAGgtcagaacta ... tgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
EST: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAG AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
genomic: AAACAATTGTTGTTAGCTCTCACAAGCAAGCTTCAGCAACGACAATGAAGgtcagaacta ... tgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCT
tgtagaagtaattaactattgggtcttaactgctctttgatttgttgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG
aagtaattaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccactagatcttgtatttaactatttcctttcatgttttaaatgtagaagtaattaactattgggtcttaactgctctttgatttgttgtgttacagAAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -ccactag
- - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - -aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctattgg