1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagatccttaggcctatgtttattagtttttgaaaaccaaaattttcagaatggaatactttaaacatcaaatgttttagctctaggaaatgaaactgtcggagaacttgtctgaatttcattttctaatgtcagTTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT
species | Glycine max |
transcript | GLYMA16G29590.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACCAACAAGTACACGAGGCACTGTG TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCEST: gi|209707453|gb|BW664912.1|BW664912
genomic: TACCAACAAGTACACGAGGCACTGTGgtaagatcct ... ctaatgtcagTTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACC
EST: CTAAAACATTTGAAGCAATTAAAATACCAACAAGTACACGAGGCACTGTG TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCEST: gi|192294951|gb|FG986670.1|FG986670
genomic: CTAAAACATTTGAAGCAATTAAAATACCAACAAGTACACGAGGCACTGTGgtaagatcct ... ctaatgtcagTTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACC
EST: CTAAAACATTTGAAGCAATTAAAATACCAACAAGTACACGAGGCACTGTG TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACC
genomic: CTAAAACATTTGAAGCAATTAAAATACCAACAAGTACACGAGGCACTGTGgtaagatcct ... ctaatgtcagTTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACC
ctctaggaaatgaaactgtcggagaacttgtctgaatttcattttctaatgtcagTTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT
ttctaat putative branch site (score: 2)
tttcattttct CT-rich tract
aatttcattttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatccttaggcctatgtttattagtttttgaaaaccaaaattttcagaatggaatactttaaacatcaaatgttttagctctaggaaatgaaactgtcggagaacttgtctgaatttcattttctaatgtcagTTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT