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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcctattttatatttttacattggatgttctcaattctttatccttgttcaactgtgctatacttgatttaatttttgctttgttgcatcaattgcagTACTGCGTGCATGAAGCTTGAGGAATATGAGACTGCTAAGGCTGCTCTAGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGCTACTTTGATC

Basic information

species Glycine max
transcript GLYMA16G29450.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29450.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0050g01510.t01 (Vitis vinifera), 3'ss of exon 2
--------catc-ctattttatatttttacattggatgttctcaattctttatccttg-ttcaactgtgctatacttgatttaatttttgctttgttgcatcaattgcagTACTGCGTGCATGAAGCTTGAGGAATATGAGACTGCTAAGGCTGCTCTAGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGCTACTTTGATC
        ||    | | |||| ||||||| ||   | ||  || | || | |      |||  | ||  | |  || | || ||||||  |||||| ||       ||| ||||| || |||||||||||||||||| | ||||||||||| ||  | ||    || || || ||| | || |   | ||||| ||  ||| |||||| 
ctctgaatcactgttgtcttatgtttttacctt---ttttagcagtcctcttttagcacttccccagtaatttcatttaattcattttttttttgtttca-------cagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAAACAGGGGCTTCCTTGGCACCGGGAGATTCAAGATTCACTAATTTGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193455369|gb|FK419290.1|FK419290
EST:     AAAGCAATTGAATTGAATTCTTCTCTACCAAAAGCATATTTGCGGAAAGG                         TACTGCGTGCATGAAGCTTGAGGAATA
genomic: AAAGCAATTGAATTGAATTCTTCTCTACCAAAAGCATATTTGCGGAAAGGgtaagtaccc ... tcaattgcagTACTGCGTGCATGAAGCTTGAGGAATA
EST: gi|7145795|gb|AW507717.1|AW507717
EST:     AAAGCAATTGAATTGAATTCTTCTCTACCAAAAGCATATTTGCGGAAAGG                         TACTGCGTGCATGAAGCTTGATGAATATGAGACTGCTAAGGCTGCTCTAGA
genomic: AAAGCAATTGAATTGAATTCTTCTCTACCAAAAGCATATTTGCGGAAAGGgtaagtaccc ... tcaattgcagTACTGCGTGCATGAAGCTTGAGGAATATGAGACTGCTAAGGCTGCTCTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttcaactgtgctatacttgatttaatttttgctttgttgcatcaattgcagTACTGCGTGCATGAAGCTTGAGGAATATGAGACTGCTAAGGCTGCTCTAGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGCTACTTTGATC
                       atttaat  putative branch site (score: 4)
               tatacttgatttaatt  TA-rich tract