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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatttcttcccttaaaaatctaattgcatatgataccttgacattctctgttattaataaagtgatctaaaaattgtttcacaaacttactcttacttgttcttgttttcattcccttaatcttttggcagGCTGTTTTCCAACGTTACTTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTACAGTAACGGAAAGCGATCGCTTGATTTG

Basic information

species Glycine max
transcript GLYMA16G28820.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207832171|gb|GD803051.1|GD803051
EST:     GGACAAAGAACT                         GCTGTTTTCCAACGTTACTTTGCGTCCTGAGAAGGACTATTTGTCTTTTTC
genomic: GGACAAAGAACTgtgagatttc ... cttttggcagGCTGTTTTCCAACGTTAC-TTGCGTCCTGAGAAGGACTATTTGTCTTTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacaaacttactcttacttgttcttgttttcattcccttaatcttttggcagGCTGTTTTCCAACGTTACTTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTACAGTAACGGAAAGCGATCGCTTGATTTG
                       ttcttgttttcattcc  CT-rich tract
                                        ttaatctttt  TA-rich tract