1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgaggtaatggaagattattaattcaactaggttttgggtgttgagttttcttcacaaagtttgtttcttttgtcaattggtttcctatacaccacacTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATTGTTTCGTGCTAAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCT
species | Glycine max |
transcript | GLYMA16G28350.2 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC TTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATTEST: gi|213602893|gb|DB972467.1|DB972467
genomic: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTCatatccttaa ... tacaccacacTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATT
EST: TGGGTATCAAAGTTTGCATAGCAGAAGTGCAATCAGCTCTAGTTTC TTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATTEST: gi|298192637|gb|HO033071.1|HO033071
genomic: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTCatatccttaa ... tacaccacacTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATT
EST: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC TTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATTEST: gi|208050404|gb|GD845865.1|GD845865
genomic: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTCatatccttaa ... tacaccacacTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATT
EST: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC TTCTCTTCCAAGCAACAGGAACATGGA
genomic: TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTCatatccttaa ... tacaccacacTTCTCTTCCAAGCAACAGGAACATGGA
gagttttcttcacaaagtttgtttcttttgtcaattggtttcctatacaccacacTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATTGTTTCGTGCTAAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCT
ttcctatac putative branch site
tttcctat CT-rich tract
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaggtaatggaagattattaattcaactaggttttgggtgttgagttttcttcacaaagtttgtttcttttgtcaattggtttcctatacaccacacTTCTCTTCCAAGCAACAGGAACATGGATGCACAAGCCAAGAAAAAAGCATTGTTTCGTGCTAAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-ctgaggt
- - - - - - - - - - - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -tcttcac