1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatattattctggtcttaaatataagaagaagaaaaaaaaatgattcatgctgactaagaatgaaatattgattagagttatgtgttgtgacctgtgcagGCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
species | Glycine max |
transcript | GLYMA16G28310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAG GCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAGEST: gi|14125499|gb|BG789937.1|BG789937
genomic: TCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAGgtacgctatc ... acctgtgcagGCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
EST: TCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAG GCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAGEST: gi|6070043|gb|AW099600.1|AW099600
genomic: TCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAGgtacgctatc ... acctgtgcagGCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
EST: TCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAG GCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
genomic: TCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAGgtacgctatc ... acctgtgcagGCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
tcatgctgactaagaatgaaatattgattagagttatgtgttgtgacctgtgcagGCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
aatgaaatattgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattattctggtcttaaatataagaagaagaaaaaaaaatgattcatgctgactaagaatgaaatattgattagagttatgtgttgtgacctgtgcagGCTGGTCTTGCTAAACTTATTGGACTCGCTGGAGAAACCAATGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - attctgg
- - - - - - - - -aaatataa
- - - - - - - - - - - -aagaagaa
- - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg