Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctgtttttcagcacttgtgtctgttcttgtcttttttctgaatttgaatatgctatttttgggcctatttgactggtgatggttttgtcaattaagGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGAGGGAAACGGGTTTATCCCATGCCTTTTCCTGATTCATCTGTAC

Basic information

species Glycine max
transcript GLYMA16G28080.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 3
gttagctgtttttcagcacttgtgtctgttctt----gtcttttttctgaatttgaata--tgctatttttgggcctatt-tgactggtgatggttt--tgtcaattaagGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGAGGGAAACGGGTTTATCCCATGCCTTTTCCTGATTCATCTGTAC
|| || || |||  | |||| |  | | || ||    ||    |||||   ||   |||  |  |  ||   |   |||  | |  | || | | ||  | ||||| ||||||||||| |||||  ||||||| || || |||||  |||||||||||| ||  || || ||||| ||  |||| ||||| ||||||||||| ||| |  
gtaagttgattt--aacactcgcattttttattcatcgttccatttctatgttcatataattaatgattcctgttttatgataatagttgtttgcttgttttcaatgaagGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601287|gb|DB964724.1|DB964724
EST:     ATGCAGCTTCGGTGGCTTCTGAGATCCCTCTCCTAACATATGGTCAAGAG                         GATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACG
genomic: ATGCAGCTTCGGTGGCTTCTGAGATCCCTCTCCTAACATATGGTCAAGAGgttagctgtt ... gtcaattaagGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgaatatgctatttttgggcctatttgactggtgatggttttgtcaattaagGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGAGGGAAACGGGTTTATCCCATGCCTTTTCCTGATTCATCTGTAC
                         atttgac  putative branch site (score: 4)
                                         ttttgtc  putative PPT
     aatatgctattttt  TA-rich tract