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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatgctggattgaatgcataataattcagttttagtagtggtttttcttaattgctattttcttttaattggttgatttggttcattgctgttttatactactttcttgcagGCATATATCAAAATTGCCCAGGCTATATCATCCCGTGCT

Basic information

species Glycine max
transcript GLYMA16G27500.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27500.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g01620.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtaatgctggattgaatgcataataattcagttttagtagtggtttttcttaattgctattttcttttaattggttgatttggttcattgctgttttatactactttcttgcagGCATATATCAAAATTGCCCAGGCTATATCATCCCGTGCT
          |    ||  | |  ||| |  | |   |   || |  | | ||  ||  || |  |  ||   |||  |  | |||||| | |  |  ||| ||||  | | ||||||||||||||||||||||| || ||||| ||||| ||| ||
----------ccatctttgaagtctaaaatgtgaccatc--tactcatgtatccaaa--gccaggtaattgggattact--acttggttgagtttttatttttact--tgttttgcagGCATATATCAAAATTGCTCAAGCTATCTCATCTCGTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662324|gb|BI699695.1|BI699695
EST:     GTTAGAGCTGCAGAGCTGAGGAAGATATTGGTGGAGCTTGGGCCG                         GCATATATCAAAATTGCCCAGGCTATATCATCCCGTGCT
genomic: GTTAGAGCTGCAGAGCTGAGGAAGATATTGGTGGAGCTTGGGCCGgtatgtaatg ... tttcttgcagGCATATATCAAAATTGCCCAGGCTATATCATCCCGTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttttaattggttgatttggttcattgctgttttatactactttcttgcagGCATATATCAAAATTGCCCAGGCTATATCATCCCGTGCT
                                         ctactttctt  CT-rich tract
                                  ttttatactacttt  TA-rich tract