1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaacacacactcaattaaataaattcttctcaaacttgggctaattcatgtagccaattgggttttacactttcactaacctttttttctttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
species | Glycine max |
transcript | GLYMA16G27350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAGEST: gi|58014493|gb|CX701235.1|CX701235
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
EST: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAGEST: gi|8402267|gb|BE057901.1|BE057901
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
EST: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAGEST: gi|31465260|gb|CD407288.1|CD407288
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
EST: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
ttcatgtagccaattgggttttacactttcactaacctttttttctttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
cactaac putative branch site (score: 1)
ctttcactaacctttt CT-rich tract
tttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacacacactcaattaaataaattcttctcaaacttgggctaattcatgtagccaattgggttttacactttcactaacctttttttctttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
- -acacaca
- - - - - - - - -aaataaa
- - - - - - - - - - - - - - -ctcaaac
- - - - - - - - - - - - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactttc