1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actctgggccacaacacttgtctgtggttactttagtggggcaaaattgttccccgctacaatgctggttattaacaaaagaagaggctttctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATGCTAATGAAAATCCTTATGGTCCCCCTCCAGAG
species | Glycine max |
transcript | GLYMA16G27220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|192330819|gb|FK023048.1|FK023048
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTACCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|209706878|gb|BW653144.1|BW653144
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|254330364|gb|GR841629.1|GR841629
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|14126228|gb|BG790666.1|BG790666
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|192322955|gb|FK016686.1|FK016686
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|209716352|gb|BW650751.1|BW650751
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|18040723|gb|BM309017.1|BM309017
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|13480103|gb|BG509446.1|BG509446
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATEST: gi|192325422|gb|FK018378.1|FK018378
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
EST: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAG GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGCATATCGTGAAGTTAGAT
genomic: GAGAGCATCTGAGGAAGTTGGCTCCTTATCAGCCCATTTTGCCCTTTGAGgtttgtgtca ... tctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGAT
attgttccccgctacaatgctggttattaacaaaagaagaggctttctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATGCTAATGAAAATCCTTATGGTCCCCCTCCAGAG
tattaac putative branch site (score: 1)
ctttctgtt putative PPT
ttattaacaaaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctgggccacaacacttgtctgtggttactttagtggggcaaaattgttccccgctacaatgctggttattaacaaaagaagaggctttctgttgcagGTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATGCTAATGAAAATCCTTATGGTCCCCCTCCAGAG
- - - - ccacaac
- - - - - - - - - - tctgtgg
- - - - - - - - - - - - - - - - - -gtggggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa