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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctaaactaaagctactcatcatggcagtgtgtttacatggtcatactctatccatatcaatttatatattagatgctgtcttccttaacatatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC

Basic information

species Glycine max
transcript GLYMA16G27200.1
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 2
acctaaactaaagctactcatcatggcagtg--tgtttac-atggtcatactctatccatatcaatttatatattagat----gctgtcttccttaacatatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC
      ||||  ||| ||   ||  |   ||    ||||   |||   || ||| || || |  ||||   |||| | |      ||| ||||||||||| |  |||| || || |||||||||||||| |  |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
---aggacta--gcttcttgacaatgtgatgatcatttattgtggatttattctttcaatgt--atttccgtattggtttatgattgttttccttaacatctttcagTATTTAACAGCTGTGATGTTTTACGACCTTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716318|gb|BW657464.1|BW657464
EST:     AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAT                         TGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATgtatccttac ... catatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
EST: gi|151410336|gb|EV280151.1|EV280151
EST:     AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAT                         TGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATgtatccttac ... catatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
EST: gi|151409239|gb|EV279047.1|EV279047
EST:     AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAT                         TGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATgtatccttac ... catatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
EST: gi|151410478|gb|EV280293.1|EV280293
EST:     AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAT                         TGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATgtatccttac ... catatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctatccatatcaatttatatattagatgctgtcttccttaacatatagcagTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC
                                     ttccttaac  putative branch site 
     tatccatatcaattta  TA-rich tract