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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactataaagaataaaaataatgcagaggtactcatatggtgttttcttataatttatttttctatgaaactaagttttttcctgtgaattctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACAGTCCTCATTGGCAATGATTTGAATGATTGTGCACAGAACCATTGCAGCA

Basic information

species Glycine max
transcript GLYMA16G27190.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27190.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g04330.t01 (Vitis vinifera), 3'ss of exon 2
tactataaagaataaaaataatgcagaggtactcatatggtgttttcttataattta--tttttctatgaaactaagttttttcctgtgaattctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACAGTCCTCATTGGCAATGATTTGAATGATTGTGCACAGAACCATTGCAGCA
   |        | | |||| | | |   |  |  |             || ||  |  | ||||| |     |    |||||||| |        |||||||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||| |  || | |||||   |||||| |||| ||
-ggtgggtgcctttagaatagt-ctgttatgtttgttccacaacacaaaatgatggacctctttctctctcgttttcatttttcctattttggaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACAGTCCTTATTGGCAATGATCTTGATAACTGTGCTGTGAACCACTGCACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600799|gb|DB958419.1|DB958419
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|23726888|gb|BU761447.1|BU761447
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298196669|gb|HO041412.1|HO041412
EST:     GTGGCTACAGAAATGTGACAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACA
EST: gi|298185848|gb|HO031009.1|HO031009
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|151400717|gb|EV270531.1|EV270531
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298198772|gb|HO042135.1|HO042135
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|151413142|gb|EV282950.1|EV282950
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|6719810|gb|AW307457.1|AW307457
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|192328731|gb|FK022531.1|FK022531
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|209719175|gb|BW662779.1|BW662779
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|16105480|gb|BI893220.1|BI893220
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298180414|gb|HO021967.1|HO021967
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|6848954|gb|AW351244.1|AW351244
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298192106|gb|HO036188.1|HO036188
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|192328732|gb|FK022532.1|FK022532
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|18040471|gb|BM308765.1|BM308765
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|10843173|gb|BF066486.1|BF066486
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATGACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298167497|gb|HO012760.1|HO012760
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298192995|gb|HO033440.1|HO033440
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACGCTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298166154|gb|HO009125.1|HO009125
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298199428|gb|HO042791.1|HO042791
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|17022079|gb|BM093113.1|BM093113
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298178319|gb|HO024054.1|HO024054
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298182989|gb|HO028252.1|HO028252
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298193754|gb|HO040402.1|HO040402
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|209719176|gb|BW662780.1|BW662780
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|151396857|gb|EV266730.1|EV266730
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|193524107|gb|FK481432.1|FK481432
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACACTTTCTGCAGCCTGTGCTTCTGCTGGTATTAC
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTAC
EST: gi|192330425|gb|FK022626.1|FK022626
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298190153|gb|HO032274.1|HO032274
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|4396929|gb|AI495926.1|AI495926
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298164706|gb|HO014351.1|HO014351
EST:     GTGGCTACAGAAATGCGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|151394058|gb|EV263929.1|EV263929
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|298182008|gb|HO026183.1|HO026183
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
EST: gi|6914735|gb|AW396265.1|AW396265
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCNGTGATGGG                         ATTACTTCAACACTTACATTT
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTT
EST: gi|151410068|gb|EV279876.1|EV279876
EST:     GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGG                         ATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA
genomic: GTGGCTACAGAAATGTGAGAATTGTCCGCTTATTCTCTATCGGTGATGGGgtaagacaat ... tctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttataatttatttttctatgaaactaagttttttcctgtgaattctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACAGTCCTCATTGGCAATGATTTGAATGATTGTGCACAGAACCATTGCAGCA
     taatttatttttctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tactataaagaataaaaataatgcagaggtactcatatggtgttttcttataatttatttttctatgaaactaagttttttcctgtgaattctggtgcagATTACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATTACAGTCCTCATTGGCAATGATTTGAATGATTGTGCACAGAACCATTGCAGCA

- - ataaagaa
- - - - - - - aaaataa
- - - - - - - - - - -tgcagag
- - - - - - - - - - - - - - - - - -tatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtga